rs31332532 SNP Detail

Summary

• ID
  rs31332532
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:90566350 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGGG AGTACTGTTC ACTGGCTTTA
  K
  TGTATGCTGA GTCAGAGAGG CAAGG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45523398	mCV24984330	ABI	CRAMUS_MOUSE	f	SNP		T				T		G
ss60424108	NES15930451	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	G	T		G	G	T	G		G	T	G		G
ss135478341	ENSMUSSNP1886075	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						G
ss320838514	CHEV_3_90462965	CHEVERUD	SCREENING_POP	f	SNP											T				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31332532					SNP	T	T	T	G	T	T	G	G	T	G	T	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60424108	NES15930451	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90566350 () rs orientation: forward

Symbol	Name	Function Class
Gm57853	predicted gene, 57853	374 bp downstream
S100a7a	S100 calcium binding protein A7A	913 bp downstream
Tssr946	transcription start site region 946	907 bp upstream
Tssr30264	transcription start site region 30264	608 bp upstream
Tssr34247	transcription start site region 34247	380 bp downstream
Tssr34248	transcription start site region 34248	398 bp downstream