rs31332428 SNP Detail

Summary

• ID
  rs31332428
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101204565 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACTATGAA GTCCGGTTCT
  TTCTATAGGG TTTAACATTG AAAAGAAAAC TGGGCTCATG GTCTAACCCT GGAAACCTAG
  TAGTTTCAGG AAGTACAGGG GTCAGGGACT TGGAAACGTG GCTTTCAGAA GACACACTGG
  TCACACTTTG TGTTCGGGCT ACCTATCCTA TGGGGCAAGT CACCACACAG CCACCTGACA
  Y
  AGCTGCACCG GATACTTCTG GAGTCCTGGC TTCTCACTGT CCTGCTAGGG GAGGCACTAG
  GTGCCTGGGC TGCTACAGAT GGCGGGATGT TGAGCATGGA GGATGGTGGC TTCACTGATG
  TGCCTAATGC CTGCACCTGG AAGCTTGATT GGCACATCCC ACAAGGCCTC TGTCTGGTTT
  GTGGCTCCCC AGGGTGGGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45522611	mCV22287098	ABI	CRAMUS_MOUSE	f	SNP		T					C		C
ss46813250	NES10715173	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	T	C	T		C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31332428					SNP	C	T	C	T	C	T	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46813250	NES10715173	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101204565 () rs orientation: forward

Symbol	Name	Function Class
Gm32803	predicted gene, 32803	641 bp upstream
Gm65445	predicted gene, 65445	237 bp upstream
Rr397890	regulatory region 397890	1347 bp downstream
Rr581999	regulatory region 581999	1267 bp distal
Rr582000	regulatory region 582000	1527 bp distal
Rr582001	regulatory region 582001	472 bp distal
Rr582002	regulatory region 582002	within coordinates
Tssr30898	transcription start site region 30898	232 bp upstream
Tssr30899	transcription start site region 30899	274 bp upstream
Tssr34786	transcription start site region 34786	683 bp upstream