rs31329980 SNP Detail

Summary

• ID
  rs31329980
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:17980231 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTTATATG TGTGTGTGTA
  TATATCTGTG TTTTGTCTGT ATGTGTTGTA TGTGTGTTGT GTGTGTGATG TGTGTGATGT
  GTGTATGTCT GTGTGTGTTG TGTGTGTTTC TATGTGTCTG TGTATTGCTT GTGTGTATTA
  TCTAGTTAAG TGTCTAGAAA AATGCATCTC TGCATCTGGG GAAACTTTTG TGTCTAAAGG
  R
  CTCTGTGACT TTGGGAGGAA GTGCCCTTGG CTGTTCTAGT ATAGTAGTAT AACCATAGAC
  TCCCGTGAAC TTGGTGGGGC AGGATGATCA ATGGTTATCC AGAGCTGGTG GCCTCAAGCT
  TTCACTGAGG TCAGGAAGCA TATGCTACAC AGGGATAGTA TGTTTCCGTG GCAACAAGAA
  CAAATCCAGT GTCTGTGAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ
ss46020084	mCV24837719	ABI	CRAMUS_MOUSE	f	SNP		G	A					A
ss51883289	NES14902288	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	G	G	G		G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ
rs31329980					SNP	G	G	?	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51883289	NES14902288	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:17980231 () rs orientation: forward

Symbol	Name	Function Class
Mill1	MHC I like leukocyte 1	Intron
Tssr64734	transcription start site region 64734	1090 bp downstream
Tssr64735	transcription start site region 64735	1070 bp downstream
Tssr64736	transcription start site region 64736	904 bp downstream