rs31329624 SNP Detail

Summary

• ID
  rs31329624
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:86990691 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTCTGAGT GCTGAGAGGT
  GTAGGAGAAC CGAGTGGCGG TGGCATACTT GCCAATAGGG TCATACGCTT CGTAGGGGGT
  CCTCTCCAGG CCAGAGGGTG GGGCCTGGGG GTAGCCTAGA CGGTATGTAG GATACCCAGC
  TGCCCCGGGA AAGGGGTGGG AGTTGAACTT CTCATAGTTC TCGTAGGACA GCTGGCTGGT
  Y
  GTATCGGTGC CACCCGGAGC AGAAGGGCCA GAGGGTGTAG GCTCTGTGCC ATAGTCAGAG
  GCAGGGGCCC GGCTGTACGT ATTGAGCTGG GCATAACCAC TGGAGTGGGA CAGGCGGGAT
  GATGGGCGCC CATCAAAACG AGTAGGGCCA GGGGCACGGT AGTCAGCATA CAGCACCGCC
  CTGGAGGACG GGCGATCTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45521767	mCV24905793	ABI	CRAMUS_MOUSE	f	SNP		T	C					C		C
ss46738334	NES10744935	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C		C	C	C	C	C	C	C	C	C
ss135453700	ENSMUSSNP4599331	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31329624					SNP	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46738334	NES10744935	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:86990691 () rs orientation: forward

Symbol	Name	Function Class
Kirrel1	kirre like nephrin family adhesion molecule 1	Coding-Synonymous
Rr579434	regulatory region 579434	717 bp distal
Rr579435	regulatory region 579435	960 bp distal