rs31327506 SNP Detail

Summary

• ID
  rs31327506
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126403236 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTTGCTCT ACAGCCCTTT
  TCAATAGCTT CCCCAGCAGA CTTGCTGGCT GACAGTTGTT ACATTGTTAA CACATAAACA
  CACACTCTAT TCAATCACTC CTGAGACCCT ATGGCAGTGA CTTGTTCTGA GTAACTTGAC
  TACTTCCTGC CCTCGCAGTA GACAGTTTCT ATCCTCCAGT ACAGCGGCCT CCCTAAGGCT
  R
  AGACCCTCTA ACCCAATTCC TCATGTGGTG GTGACCCCCC CCCGCCCCCA CCCCCCTAAC
  CATAAAATTA TTTTTATTGC TACTTCTTAA TTGACATTTT GCTACTAATT GCTAATCATA
  ATGTTAATAT TTATATTTTC CGATGGTTTT GCGTGACCCT GTGAAAAGGG ACAGGACCCA
  GAGGTTGACA AACTCTGATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45522288	mCV23467137	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss320946669	CHEV_3_126312505	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs31327506					SNP	G	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126403236 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Gm17225	predicted gene 17225			179 bp upstream
Rr584652	regulatory region 584652			190 bp distal
Rr584653	regulatory region 584653			within coordinates
Rr584654	regulatory region 584654			1316 bp proximal
Rr584655	regulatory region 584655			1890 bp proximal