rs31325198 SNP Detail

Summary

• ID
  rs31325198
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:63567298 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGAGCAAGC ATGACACATG ACTCCTCTAA CGCATGCAGT
  TCTCTGTGGC CAGAGCAGGC ACTCACACCT GTGCAGTGAC TGCCAGCCAA GATATGGCTG
  R
  TAACAAAGGC TACCTGTCCC TGGGCCGTTT ATTCCTAAGT CTTCAGTGAG AACAAGGCCA
  AGCAGCTCGC TCTCCTCCCT TGGGTGCATC TTCTGGGGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46020889	mCV25343618	ABI	CRAMUS_MOUSE	f	SNP	G	A		A	G
ss48254227	NES11790866	PERLEGEN	MM_PANEL2	f	SNP		A	A		G	A	G	A	A	G
ss144834826	ENSMUSSNP3358285	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A			G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs31325198					SNP	G	A	A	A	G	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48254227	NES11790866	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:63567298 () rs orientation: forward

Symbol	Name	Function Class
E030018B13Rik	RIKEN cDNA E030018B13 gene	Intron
Gm53391	predicted gene, 53391	within coordinates
Klf13	Kruppel-like transcription factor 13	Intron
Rr647715	regulatory region 647715	832 bp distal
Rr647716	regulatory region 647716	within coordinates
Tssr66988	transcription start site region 66988	634 bp downstream
Tssr66989	transcription start site region 66989	302 bp downstream
Tssr72768	transcription start site region 72768	1421 bp downstream