rs31325005 SNP Detail

Summary

• ID
  rs31325005
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:160902808 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tctcgacgc tgtctcaaaa atcgctcaaa
  ggattgtctc tcccttctat ttcctgtgtc tctgtcttcc aacttccttt tgctctctgt
  ggttctttct gatgctcact ccctgtcacc tggatgtttg ttctgcctct tgacctatgg
  K
  taactctatt ttagtcctgt ttacaataac cagcaagctc ttggatcaaa ggtatgtgct
  agggctgagc cgtaccataa ctagaaaccg tttttcctaa taaacaacac aacctcaggg
  ttcacagtgt gattaCTAGC TCACCTTCAA                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45020280	mCV24547411	ABI	CRAMUS_MOUSE	f	SNP		T	T	G
ss145905455	ENSMUSSNP556859	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T		G
ss320080228	CHEV_1_163005369	CHEVERUD	SCREENING_POP	f	SNP					T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31325005					SNP	G	T	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:160902808 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cenpl	centromere protein L			Intron
				Noncoding-Transcript-Variant
Rr396459	regulatory region 396459			1049 bp upstream
Rr421754	regulatory region 421754			996 bp proximal