rs31324630 SNP Detail

Summary

• ID
  rs31324630
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:160346793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTAGAAGTG AAAAGAAGAG
  CAAGAAGTGA GGTCTCAGGA AGAAGGAGAT CTGTCAGGGA TAGTTTAGTA TTTATTAGAT
  TCCACCATAT CATTAGTTGA GGCTAGAACA TACTTAAGGA AGAAACAAAC ATGTCTATCA
  ATTTGACAGA AGTGAGACTG GTTCCTAGAA AGTGGACACT GTAAATGCAA CTCAGCTTCA
  R
  TCAAGACATC TGCAAGCCAG TCATAAATAA CCTATGAATG CTGACATGTC ATTTAAGGGG
  TTAAAAAGTA TAATACTGCA CTTAGTTAAT GTGATATTAT TATTTTTAAT GTTTAACTAT
  AAATGTAGAA CTCTCACTTA TATAGAAAAT ATAGTTGCAT ACCAGAATGC TATAAACCAG
  GCAAACCGGT TTATTCTAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45101191	mCV24556284	ABI	CRAMUS_MOUSE	f	SNP		A	G					A
ss49727727	NES13050850	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	A	A	A		A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31324630					SNP	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49727727	NES13050850	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:160346793 () rs orientation: forward

Symbol	Name	Function Class
D1Mit503	DNA Segment, Chr 1 Massachusetts Institute of Technology 503	1754 bp distal
Rabgap1l	RAB GTPase activating protein 1-like	Intron
Rr421674	regulatory region 421674	298 bp distal
Rr421675	regulatory region 421675	1517 bp proximal