rs31323176 SNP Detail

Summary

• ID
  rs31323176
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:151768215 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACAGAGTGAA AGGTTGACAG TGGTTTCCAG CCCTCCTAAG
  AAGTCACGGG GTTGTCGCCT CATCTCCTCT GACCACTCAC AGCCCTTCCA AACCATGTTC
  R
  ATGTCTCCAG AAGGGTGGGG AGCCATTTAG GCCAATCATC AGTGTCCCTG TGAAGGAGGA
  CTTAGCTTCC ACACCTAGGG TCATCTTTAA CTGAACTGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45019293	mCV23125071	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31323176					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:151768215 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1700025G04Rik	RIKEN cDNA 1700025G04 gene			Intron
				mRNA-UTR
D1Mit513	DNA Segment, Chr 1, Massachusetts Institute of Technology 513			454 bp distal
Rr420379	regulatory region 420379			1724 bp distal
Rr420380	regulatory region 420380			493 bp distal