rs31321163 SNP Detail

Summary

• ID
  rs31321163
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126417573 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCATTGTA ATTTGAGTGG
  GGAAGCAGAA GTGACAAGCC CTTAGATTGA ACTTCGTGTT TGTGTTTTAG TTTGTGTTTG
  TTTGTTTTTA AGTTCTCATG TGCTCATGAT TGCTCCTCTG CCTCCATGCC TTAGGGCTGC
  CATTCAAAGA TGGCAAAATG CATATACGAT GCCCTTTCTC TGATGCCACC AGACTAGGGT
  Y
  TTCCCAGTCT TGTCTCTTTC TTTATCTTTT CTTTCATCTT AGCTTTATTT AGAAAATATA
  AATATGTCTT GGCTGTTTCT TATGAAACTG GTGCTCTTTA GTCTTTAAAC TGTATAGATT
  TGCACATTAC ACAAGTTCTT GTAAAGGCAG AGTTTGCAGG TTACGTTCCT CTTTTTATCA
  TCTTCAGCAG ATTGTGGGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45521427	mCV23466502	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T
ss135837324	ENSMUSSNP1294069	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		T
ss320946774	CHEV_3_126326842	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31321163					SNP	C	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126417573 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Gm43010	predicted gene 43010			1956 bp upstream
Gm64675	predicted gene, 64675			409 bp upstream
Rr584659	regulatory region 584659			1277 bp proximal