rs31310950 SNP Detail

Summary

• ID
  rs31310950
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:159270384 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTAGCAAGT ATTGTTTTGT
  TTCATAATGA TAATTGTTAA GATGCTACAG AACTGGCTTA ACCCAAAAAT ATAGGTCATT
  GGGAGATAAG TTTCCATAAA TAGACTCTAA AGAAAAAAAT ATTTTTAATA CACAGCGAGT
  GAAGTATACG GGATTTCAGT GGGGAGAAGG GATCGTGTGC TTTCCTAGGA TCATGAGAAG
  Y
  AATGTGGAGA GCACGCTAGA CTTATAACTT AGAGGGTACA ACTTCATCTG TGTAGGTGGA
  TTAGAGATGC ATTATTAAAT AGTAAAAAGA AAATAGATGC TTACAGAACT CGGAGGGGAG
  TTCATTTCCT CTTCACTTCA ATTAACATTT CCTGTACTAA GAATGACAGG TTAAGAGCCA
  GTAGATTTAA AATGCCACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49725336	NES13055677	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31310950					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49725336	NES13055677	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:159270384 () rs orientation: forward

Symbol	Name	Function Class
Rr421534	regulatory region 421534	1348 bp proximal