rs31310388 SNP Detail

Summary

• ID
  rs31310388
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:148136026 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAATTGAAA GGTAGTTATT
  AAAATGTTTA AGTTCACTTT GAGAAAGTAT TAAGTCATGG AGTACACAGT GCATTCTGCC
  TTGTAGAATG GGTATAACTG GAAATTCCTC CATTTCAGGA ATCCTGATTT CCATCAGCCA
  CACACATTTT CCTTAAAAAC AGGAATCTCC AAGTGGGAAC ACGTATTTGG TGGTTGGAAT
  S
  CAAATATAGT TGTCATTGTA ACCCATGAGT AGCTTCCAAC AGTCAGAAGT TCTTAAGGGG
  GAGAAGAGAA GAATGGCATC CAGAAAGAAG ATGGATCTGA ACATGGTATA AGGGAATGTG
  ATGCCTCAGA AGCTTGAGAA CCAGAGTTCA AATTCTCTAA ACCTGCATAA AAACTGGATG
  TGTGGATCAT ATGCCTGTGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47038814	NES10841139	PERLEGEN	MM_PANEL2	f	SNP	G	C	G	C	C	G	C	C		G	G	G	G		C
ss321015438	CHEV_3_148093354	CHEVERUD	SCREENING_POP	f	SNP									C					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31310388					SNP	G	C	G	C	C	G	C	C	C	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47038814	NES10841139	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148136026 () rs orientation: forward

Symbol	Name	Function Class
Rr587193	regulatory region 587193	1112 bp distal
Rr587194	regulatory region 587194	549 bp proximal