rs31309572 SNP Detail

Summary

• ID
  rs31309572
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:148135394 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCCCTTGT AGCACACCCT
  CCTGATGACT TCATCTGCAT TACAGGCCGC CTTTCTTCAA GAACAAACCA TAAATAATGG
  CACCATAAGC AAATGTTTCT TATTACAGCG AATGCACAAT ATGAGTTAAA CTACCGCAAT
  TTTATTCTTT AAGGCAACCT TGACATTCCA GGCGTTGTGC CATCCTGTCA GATGGGAACA
  M
  AACATGGTAA AAATGGCCTT GCAGCTATGA CTTCAGTGAG ATCAAAATCC AAGAACTAGA
  AACAAAAGAA AAAGACTGAT CTCTTTTTTT ATGTAGTCTA AATAACCACT TAAATTTCTT
  TCCATAGTTT GCTGTTGAAT ATATTGCTGA AGTGGATTCC TCAACATTTT CTCACAGTGG
  GAGAATTAGA ATAGGAAGAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47038808	NES10841134	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31309572					SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47038808	NES10841134	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148135394 () rs orientation: forward

Symbol	Name	Function Class
Rr587193	regulatory region 587193	480 bp distal
Rr587194	regulatory region 587194	1181 bp proximal