rs31309566 SNP Detail

Summary

• ID
  rs31309566
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:148134641 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAACGATG GAGACTGGGT
  CTCCCAGAGG CTGCTGAGAA ACACAGCAGT CTTGGAACAA GTAGACCTCG TAAAGGACTT
  TGAGAATCAG CCACACTACG CTGAAGTCAC TGAGATACCA CCATGCCCAG GAGACCAATA
  TTTGTAAAGT CACAGCCTTT CCCCCCTCTC TGACACAGTC CAGAAAAACT ATAACAAGAT
  R
  ACATTAAAAA GTGGGGTTCT AGAGAGTATG AGAGCAGCTT CCCCTCTACA AAGCAGAGGC
  TTGAAGTGTG GGAGCCCACG ACCCAGAGTG ATGTACAAAC AAAGTACAGA CACAGAAATA
  CAAAGAGACA CTTATTCTCC CACTGTTGCC CAACAAAGAA GGCGGCTTTG ACTCATGACA
  CTATTTAGAC ATCAGCTAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47038802	NES10841129	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31309566					SNP	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47038802	NES10841129	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148134641 () rs orientation: forward

Symbol	Name	Function Class
Rr587193	regulatory region 587193	158 bp proximal
Rr587194	regulatory region 587194	1934 bp proximal