rs31309029 SNP Detail

Summary

• ID
  rs31309029
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:100689052 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                                   
  TCTTCTGTTG AGGGACATCT GGGTTGTTTC CAGCTTCTGG CTATTAGGAA TATGGCTGCT
  ATGAACATAG TGGAGCAAGT GTCCTTATTA TATGTTGGAG CATCTTCTGG GTATAATTCC
  AGGAGTAGTA TAGCTGGGTC CTTCAATTTA CTGAGGAACT GCCAGACTGA TTTCCAGAGT
  GGTTGTACCA GCTTGCAATT CTGCCAGTAA TGGAGTGTTC CTCTTTCTCC ACATCCTTGC
  CAGCATATGC TGTCAACTGA ATTTTTGATC TTAGCCATTC TGACTGGTGT AAGGTGGAAT
  M
  TCAGTGTTGT TTTGATTTTT ATTTCCCTGA TGACTAAGGA TGTTGAACAT TTCTTTAGGT
  ACTTCTTAGC CATTCGAGTT TCCTCAGTTG AGACTTCTCT GTTAGCTCTG TTCCCCATTT
  TTTAACAGGG TTATTTGACT CTCTGGAGTT TAACTTCTTG AGTTCTTTAT ATGTATTAGA
  TATTAGCACT CTATTAAGTG TAGGATTGGT AAAGATCTTT TCTCAACCTG TTGGTTGCCC
  CTTTGTCCTA TTGACAGTGT CTTACAGAAG CTTTGCAATT TTTTGAGGTC CCATTTGTTG
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45018688	mCV25353816	ABI	CRAMUS_MOUSE	f	SNP	C	A	C
ss148635673	ENSMUSSNP5374164	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs31309029					SNP	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:100689052 () rs orientation: reverse

Symbol	Name	Function Class
Cachd1	cache domain containing 1	Intron
Rr596037	regulatory region 596037	1853 bp proximal