rs31307310 SNP Detail

Summary

• ID
  rs31307310
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:148133211 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTCTCTTT CTAACCTGTC
  CCACCCTCCC CTGCCCCCTT TCCTAGCACT ATGTGTCTCC AGTTTCCTTC TCTTGCCTCT
  TCCCTATACT CCTTGCCAGT GACTGGCTGC TGCTCCCCAC CTGAAAATGA GCTGGCAAGG
  AAAACTGACA TTGGACAGTA TTCTACATCT CACTGTGGCA CGCATATGAA GAAATTGCTT
  Y
  CTGACAAATA CCCCTGCACT AGACTGTCCT ATTAACTATC TAAGTGAGCA CAGGTGAGTA
  TTCCTTATCA AAGGCCCACC TACCGTAATT ATTGCTAAGT ATGCCTTCAC TGAAAAGATC
  CCGGCTGTGA TAGCCAAGGG TCATGTTCAA GTCTCTCCGG TTATAAATGA AAATGTCCAC
  ATAGCAATAG CTCCCAGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47038774	NES10841213	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	T	T		C	C	C	C		C
ss321015433	CHEV_3_148090539	CHEVERUD	SCREENING_POP	f	SNP										T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31307310					SNP	C	C	C	C	C	C	T	T	T	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47038774	NES10841213	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148133211 () rs orientation: forward

Symbol	Name	Function Class
Rr587193	regulatory region 587193	1588 bp proximal