rs31297790 SNP Detail

Summary

• ID
  rs31297790
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:147978411 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTGTTTT GCTTTGTTTT
  CCGACAGGGT TTCTCTGTGT AGCCGACTGT CCTGGACCTC ATGCTGTAGA CCAGGTTGAC
  CTTCAACTCA GAGATCTGGC TGCCTCTGCC CCCCACATTC TGGGATTAAA GGCATATGCC
  ACCACTGCCT GGCTTGTTTG TGTTCTATTT AAAACTGAGC TGGCACAACT AGAGTTCATT
  W
  TATGATGGTT TTGGTAGCCT GACATAGTGG AAACTCAATA GAAGTAGAAA CTATTTTATA
  AACCTTATAT TATTTTTTAA TTTAGGTTGG TTCTTTCTAC ATTTTAATTT ACTTGTAATT
  CATTCTTTAT ACTCCATATT CCATTCCCAG CTCACCCTAT CCACCCTGCA AATGCTCCTC
  CACCTCCCAC ACCTCCTCCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47037295	NES10847876	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31297790					SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47037295	NES10847876	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:147978411 () rs orientation: forward

Symbol	Name	Function Class
Rr375892	regulatory region 375892	1188 bp upstream
Rr587183	regulatory region 587183	309 bp distal
Rr587184	regulatory region 587184	7 bp distal