rs31294950 SNP Detail

Summary

• ID
  rs31294950
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:41517215 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTAGTATAT GAAAAACCAA CAGCCACTCA TTTTTTACAC
  ATATGTATCA ACAGGAATCT GGCGATTGCT TTCATACTAG TCTAAAGTTT GAGTTTAAGT
  S
  TTATTCTCAG TCCTATTTGG AAGGAGAAAA ATGTCCAGTT CTGACAAGAA CGCTCTAACA
  TAAAAATCAA GACATTTTTC AGAAGGTGGT TGTCTTTTA                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45520046	mCV23248018	ABI	CRAMUS_MOUSE	f	SNP	G	G	C
ss320728792	CHEV_3_41366702	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31294950					SNP	G	G	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41517215 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13118	CpG island 13118	376 bp proximal
Cpgi13119	CpG island 13119	1734 bp proximal
Gm31266	predicted gene, 31266	within coordinates
Jade1	jade family PHD finger 1	Intron
Rr575965	regulatory region 575965	174 bp proximal
Rr575966	regulatory region 575966	568 bp proximal
Rr575967	regulatory region 575967	908 bp proximal
Rr575968	regulatory region 575968	1162 bp proximal
Rr575969	regulatory region 575969	1584 bp proximal
Tssr29001	transcription start site region 29001	1056 bp downstream
Tssr29002	transcription start site region 29002	576 bp upstream
Tssr29003	transcription start site region 29003	613 bp upstream