rs31294352 SNP Detail

Summary

• ID
  rs31294352
• Variation Type
  SNP
• Alleles
  A/C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:141874657 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGCA GGGGAGAGCG CGAGAGGACC
  V
  AAGAGTGTGG TTGTCCCATG AGCGC                                      
  
  V = A/C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss45520440	mCV24098345	ABI	CRAMUS_MOUSE	f	SNP		G	G					G		C
ss61088441	NES16600647	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G		G	C	C	G		G	G	G		G
ss320998845	CHEV_3_141831860	CHEVERUD	SCREENING_POP	f	SNP													A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs31294352					SNP	G	G	G	G	G	G	G	G	G	C	C	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61088441	NES16600647	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141874657 () rs orientation: forward

Symbol	Name	Function Class
Bmpr1b	bone morphogenetic protein receptor, type 1B	Intron
Cpgi13885	CpG island 13885	within coordinates
Rr586389	regulatory region 586389	within coordinates
Rr586390	regulatory region 586390	307 bp proximal
Rr586391	regulatory region 586391	403 bp proximal
Rr586392	regulatory region 586392	562 bp proximal
Tssr35928	transcription start site region 35928	300 bp downstream
Tssr35929	transcription start site region 35929	415 bp downstream