rs31293541 SNP Detail

Summary

• ID
  rs31293541
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116506922 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTATT AAATCTTTGA AGGTATTATT
  R
  GGAGATGGTG TAAATGGTGG CACAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45518583	mCV23407511	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A	G
ss135671151	ENSMUSSNP2420309	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		G
ss320895941	CHEV_3_116416191	CHEVERUD	SCREENING_POP	f	SNP						G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31293541					SNP	A	A	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116506922 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13739	CpG island 13739	764 bp distal
Gm54181	predicted gene, 54181	Intron
Gm64822	predicted gene, 64822	within coordinates
Rr583765	regulatory region 583765	1053 bp distal
Rr583766	regulatory region 583766	856 bp distal
Rr583767	regulatory region 583767	634 bp distal
Rr583768	regulatory region 583768	169 bp distal
Slc35a3	solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3	556 bp upstream
Tssr35331	transcription start site region 35331	1489 bp upstream
Tssr35332	transcription start site region 35332	1426 bp upstream
Tssr35333	transcription start site region 35333	1408 bp upstream
Tssr35334	transcription start site region 35334	1391 bp upstream
Tssr35335	transcription start site region 35335	1033 bp upstream
Tssr35336	transcription start site region 35336	1004 bp upstream
Tssr35337	transcription start site region 35337	763 bp upstream
Tssr35338	transcription start site region 35338	618 bp upstream
Tssr35339	transcription start site region 35339	550 bp upstream