rs31292572 SNP Detail

Summary

• ID
  rs31292572
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146556574 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTCCCCAGC AACGCTGGGC TCTAGGGATA TTGGCTATGC
  TTATGATGAC GTGCAACGTC AGTTTACCTT ATCCCAATAG CACACCATAC GGAAAAGCAA
  Y
  GTCTGTTCCT AAGTCCTGTA AATGCTGTCT TGAGCTTCAA CGTTGGTAGT GACTCTCCCT
  CTTGCTTGAG ATTGGAAGAA TGGTGGTCTG ACATGTACG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45519065	mCV23122830	ABI	CRAMUS_MOUSE	f	SNP	T	T					T		C
ss61097607	NES16606913	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T		C	C	T	T		C	C	T	C		T
ss136046451	ENSMUSSNP6365856	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							C
ss321011182	CHEV_3_146513783	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31292572					SNP	T	T	C	T	T	T	T	C	C	T	T	C	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61097607	NES16606913	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146556574 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13925	CpG island 13925	1311 bp proximal
Gm65628	predicted gene, 65628	586 bp downstream
Rr587096	regulatory region 587096	1058 bp proximal
Rr587097	regulatory region 587097	1559 bp proximal
Rr587098	regulatory region 587098	1837 bp proximal
Tssr32369	transcription start site region 32369	1540 bp upstream
Ttll7	tubulin tyrosine ligase-like family, member 7	1548 bp upstream