rs31291000 SNP Detail

Summary

• ID
  rs31291000
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:38701968 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATTTATCGA CTTTGGTTTT ATTATTTCCT GAAACAATTT
  CAGGGCATTG CTACTTGTTG GAAATTGTAC AGATGGTGCT TAGCGTCACA TTTGTTAATC
  W
  ATAATTATGA AATTGTGTCT ATTTTCCTAT ACAACCTAAC CCAACTGCCT TGCGAGGCCA
  GAACAGATGG TTTGGGATAT CCCTGGGGAT GGGCATCGG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45518546	mCV24778369	ABI	CRAMUS_MOUSE	f	SNP	T	A	T
ss134840428	ENSMUSSNP3527345	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
ss320721238	CHEV_3_38546741	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31291000					SNP	T	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38701968 () rs orientation: forward

Symbol	Name	Function Class
Rr575691	regulatory region 575691	35 bp proximal