rs31290997 SNP Detail

Summary

• ID
  rs31290997
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:127623661 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATGGCGTT TCTTCGATAC
  AGATTTCAAA CAGTAGGATT AAGAGAAAGA AAAGACACAG AGTTAGGAAA GCAGGTACGG
  GCCAAGCTTC TCGACTTCCA ATTAATTTCA TTTATGACGA TAATACATCA GGACCATTAG
  ACATCTCCCA CGTTCAGAGC CGTCCAAGTT CTTGGAGGTA TGACTTTTGG GCAAACAACA
  Y
  GAGAAGATGG CAACAGTAAG TAAGTGCCAG GAGGCACGCA GGTCCCACCC ACAGCAAACT
  CAACAGAACA ATGAATTCTT ACTCCTGACT GGACACTGCT GCCCACCCTG GGTAGTTGAA
  CTAGGGAAAG AAAAAAGCAG GGAAGGGGCT GGAGGAGGGA GGAGTCTCCG AACTAGACAA
  AAACCAGAAA ATAACAAATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45518543	mCV23993970	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss135872312	ENSMUSSNP3843979	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
ss320957258	CHEV_3_127532930	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31290997					SNP	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127623661 () rs orientation: forward

Symbol	Name	Function Class
Ap1ar	adaptor-related protein complex 1 associated regulatory protein	Intron
Gm43654	predicted gene 43654	within coordinates
Rr584871	regulatory region 584871	207 bp proximal
Rr584872	regulatory region 584872	797 bp proximal