rs31290608 SNP Detail

Summary

• ID
  rs31290608
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:83323219 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATCC CCATCTCAAA AATAAAGTGA
  S
  GTCTCCACTC AGTCCAAGAC TTTCT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45518642	mCV24526302	ABI	CRAMUS_MOUSE	f	SNP	G						C		G
ss60422588	NES15916962	PERLEGEN	MM_PANEL2	f	SNP		G	G	G	G	G		G	G	G	C		G	G		G
ss135415025	ENSMUSSNP92287	ENSEMBL	ENSEMBL_Sanger	f	SNP	G								G
ss320821382	CHEV_3_83219834	CHEVERUD	SCREENING_POP	f	SNP												G			C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs31290608					SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60422588	NES15916962	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:83323219 () rs orientation: forward

Symbol	Name	Function Class
Rr578858	regulatory region 578858	823 bp proximal