rs31290309 SNP Detail

Summary

• ID
  rs31290309
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:105611361 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTGA AGTGACTATC CTCATATTTA
  Y
  TTGTTTGTCT CATAGTTCCT TCTCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45519037	mCV22876894	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss135577612	ENSMUSSNP5795415	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
ss320863079	CHEV_3_105506963	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31290309					SNP	C	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105611361 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13661	CpG island 13661	476 bp proximal
Inka2	inka box actin regulator 2	554 bp upstream
Rr367522	regulatory region 367522	377 bp upstream
Rr582756	regulatory region 582756	64 bp proximal
Rr582757	regulatory region 582757	923 bp proximal
Rr582758	regulatory region 582758	1424 bp proximal
Tssr31079	transcription start site region 31079	612 bp upstream
Tssr31080	transcription start site region 31080	643 bp upstream