rs31289575 SNP Detail

Summary

• ID
  rs31289575
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:151773054 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGAGAGCT CAGACTCTGC
  AGGCAGACTG TAGTAGAGGC AGAGACCTGC CCCGAAACTC AACAAGTTAT TTCTTGTGCC
  CTAAGAGGTC TGGATGAGGG CACAGATGCC ACAGGGGCAG CACCTCCCCA CAGAAATGAG
  GAGGGTGTCA GAGAAATGGG GGCTCACCCT CCCGGTGTCA GCAAGGCCGA GCGAATCTCC
  Y
  TTCACGTACA CTACTGTAGC TGGCCCGGTG TTCCCTTAAA CAAGTTTCTA GAAGTGGGAC
  AGAGTCGGAG CAAAGGGCAG CTCTGAGCCT TTTCATCCAC GTTATCAATC AGCAGACAGC
  GCACAGATCT CCGTTCCCTA CAGCAGTGGA GGAGGGCAGC CATTCCTTCA CACTGGGCTG
  GGCTGACCGG GTTAGATGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss45517752	mCV24211742	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss136100487	ENSMUSSNP1097524	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C		T
ss321027907	CHEV_3_151730381	CHEVERUD	SCREENING_POP	f	SNP				T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs31289575					SNP	T	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151773054 () rs orientation: forward

Symbol	Name	Function Class
Gm64437	predicted gene, 64437	269 bp upstream
Rr587440	regulatory region 587440	477 bp distal
Rr587441	regulatory region 587441	551 bp distal