rs31287746 SNP Detail

Summary

• ID
  rs31287746
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152098848 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGTAGAC CTGAATGGTA
  TTCATTAATG TTAGTAACAA GAAAATACCC CTTAGTTTTA GGCCACTTCT ATTTTGAGAG
  CATGAAGTAT GGAATGTGTC AAATGAGATT GTTGATAAAG CTGAAACCAC TTGCAAAATG
  ATTTTTTAAT GAAATGCATA AAGTCTTTTT GAATAATAGA GTATTCACTG CTGTTTGCTT
  R
  ATCATGTGAT GTCAAAAGCT CAACTATATG CAACTACAAA CATGCAGGTG ACTGAGGGAC
  AGCATTCATG GTGACTTTGC AATGTTGTTA AAACTCATTC AATAAAAATA ATTCTAAAAT
  GTATAAACTG AATGTTGAAT TTATTTGATA GACTTTTTAA AAAAGGTGTA AAGTCTGTTA
  GTATTAATGC CTTTCATTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45517466	mCV23507507	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
ss136102866	ENSMUSSNP4941321	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G
ss321028811	CHEV_3_152056175	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31287746					SNP	A	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152098848 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13949	CpG island 13949	1356 bp proximal
Gm43857	predicted gene 43857	within coordinates
Gm66519	predicted gene, 66519	within coordinates
Rr587540	regulatory region 587540	515 bp proximal
Rr587541	regulatory region 587541	602 bp proximal
Rr587542	regulatory region 587542	1456 bp proximal
Usp33	ubiquitin specific peptidase 33	mRNA-UTR