rs31286795 SNP Detail

Summary

• ID
  rs31286795
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152056436 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGTGTTTT CTACTTACCC
  TGTCCTTGCT CACTGTGACT GCTTCAGAAA TGCTCCCTTG TGAGGAACAG GCAAGTTCCT
  GACGTGCTAG GGAACTTAGG AGAGAAGCAA GGTGTTGAGG TACCTGGAAG CTGTACTACA
  GCTATCACTA AGATCCGAGG TAGGTTCAAA GGGTATTGTG GCTCGGTATC AGTGGTGTTA
  R
  CCCATGCTCT CATTCAGTAA TCCTGGTGTG ACAGAACTGA GCTGAGAAGT GGTAAAAAGA
  CACAGCTTGG CAGTAGAAGG GAAGGAGAGG GTCGAAGGGC AATGAAGTTA GGAAGCCTCT
  GCCACTGGCT TCCAAGTTAT TTCAGGAGAA TGAAGGAACA GCAGAGTAGG TCGGGGTGGA
  GAGGTGATGG TTGGTACTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45517537	mCV25024274	ABI	CRAMUS_MOUSE	f	SNP		A	A					G	G
ss51676346	NES14645120	PERLEGEN	MM_PANEL2	f	SNP	A		A	G	A	A	A		G	G	G		G	G	G	G		G
ss136102653	ENSMUSSNP1448720	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						G
ss321028735	CHEV_3_152013763	CHEVERUD	SCREENING_POP	f	SNP												G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31286795					SNP	A	A	A	G	A	A	A	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51676346	NES14645120	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152056436 () rs orientation: forward

Symbol	Name	Function Class
Rr587536	regulatory region 587536	within coordinates
Rr587537	regulatory region 587537	1125 bp proximal
Tssr32408	transcription start site region 32408	787 bp downstream
Usp33	ubiquitin specific peptidase 33	Intron