rs31284330 SNP Detail

Summary

• ID
  rs31284330
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101206189 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTCT AGTCTTGATC CACCATGTCC
  R
  TGCCTCTTGT TTGATTTGGA GTCAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
ss45518193	mCV22287371	ABI	CRAMUS_MOUSE	f	SNP	G	A					G	G
ss46813280	NES10714956	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	A	G	A		G	G		A	A	G
ss135546301	ENSMUSSNP6065572	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
ss320851742	CHEV_3_101102796	CHEVERUD	SCREENING_POP	f	SNP										G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
rs31284330					SNP	G	A	G	A	G	A	G	G	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46813280	NES10714956	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101206189 () rs orientation: forward

Symbol	Name	Function Class
Gm65445	predicted gene, 65445	within coordinates
Rr582002	regulatory region 582002	1377 bp distal
Rr582003	regulatory region 582003	1150 bp proximal
Tssr30898	transcription start site region 30898	1367 bp downstream
Tssr30899	transcription start site region 30899	1337 bp downstream
Tssr34787	transcription start site region 34787	1324 bp downstream
Tssr34788	transcription start site region 34788	1361 bp downstream