rs31284261 SNP Detail

Summary

• ID
  rs31284261
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:123029280 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATTTGTTAG AGCCCACCAA ATGTCCATGC CCAGTGGTTA
  CGGGGAGCTG AGGCCTGTCT CCTCTGTGGA GAGTCCAGCA ACACATGAAG GAGAGAATGC
  Y
  ATGGAAGCAG CTTAAGGTTG CTGGCTGTCA GATGATAATT AACCAGCCTG TATTTCACAT
  GATAGGATTA GCATTCCCTC CGTTGATTGA TAGCTAATT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45517616	mCV23886422	ABI	CRAMUS_MOUSE	f	SNP		C				T
ss51024632	NES13910036	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	C	T		T	C	T	T		C	T	T	C		T
ss135760890	ENSMUSSNP1940760	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss320918238	CHEV_3_122938549	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31284261					SNP	T	C	T	C	T	T	T	C	T	T	T	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51024632	NES13910036	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123029280 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13775	CpG island 13775			361 bp proximal
Rr584473	regulatory region 584473			760 bp distal
Rr584474	regulatory region 584474			932 bp distal
Rr584475	regulatory region 584475			455 bp proximal
Rr584476	regulatory region 584476			1289 bp proximal
Synpo2	synaptopodin 2			Intron
				Noncoding-Transcript-Variant
Tssr35497	transcription start site region 35497			480 bp downstream
Tssr35498	transcription start site region 35498			503 bp downstream