rs31283304 SNP Detail

Summary

• ID
  rs31283304
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:57754384 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCCG GCCACTGCCG CCTCCCACAT
  Y
  CCGCGCTCAC AACCGAACCA GATCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45516824	mCV22719335	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs31283304					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:57754384 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13199	CpG island 13199			within coordinates
Gm66316	predicted gene, 66316			964 bp upstream
Pfn2	profilin 2			Intron
				mRNA-UTR
Rr577167	regulatory region 577167			1096 bp distal
Rr577168	regulatory region 577168			595 bp distal
Rr577169	regulatory region 577169			172 bp proximal
Rr577170	regulatory region 577170			1106 bp proximal
Rr577171	regulatory region 577171			1151 bp proximal
Tssr33340	transcription start site region 33340			515 bp downstream
Tssr33341	transcription start site region 33341			727 bp downstream
Tssr33342	transcription start site region 33342			761 bp downstream
Tssr33343	transcription start site region 33343			1117 bp downstream