rs31281268 SNP Detail

Summary

• ID
  rs31281268
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:148400967 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTGAGTAA GGAGAGAGGG
  ATGGAATTTA TCTATTATGG TTTTCAAGTG TCTGTGGAAT TACTAAGGTC GACTAGTTCC
  TCTCCACAGT GGAACAGAAA CAGACCCCTG GTTTGGTTTA AACTAAAATT CAAGTAAATC
  GGCTTCTTAT TAGGTAAAAT TACTCAATGA TGAAGTGGAT AAAACAAGAA CTAATGGGCT
  R
  ATGGAGTAGA CCGGGGTGGG GAGAGGACAT CGGGAAGAAC AAGAGATGGT GATCACAGAG
  AGAATATGAG CAGAGTGCAA TTATGTTAAC GTGTATACGG GGTCAGGAGT GTGTCCATTA
  TCTTATATGG TAAACAACTT AAAAGAATCT TTTCAAGTTC TGGGAGTTCC AAGATTAGTT
  GAGCAGAGAA CTGCCTGATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45516805	mCV24064374	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
ss136062989	ENSMUSSNP3420691	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G
ss321016303	CHEV_3_148358295	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31281268					SNP	A	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148400967 () rs orientation: forward

Symbol	Name	Function Class
Rr398123	regulatory region 398123	196 bp upstream
Rr587206	regulatory region 587206	15 bp proximal
Rr587207	regulatory region 587207	35 bp proximal
Rr587208	regulatory region 587208	326 bp proximal
Rr587209	regulatory region 587209	596 bp proximal
Rr587210	regulatory region 587210	1235 bp proximal