rs31280798 SNP Detail

Summary

• ID
  rs31280798
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:79897793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAGATTCA ACAGCACATA
  TACCACAGGG GCTTTAACAC AGGCTTCATG TCTTTGAGAT TATAAAGATA TTACCTTTCT
  AGGTTCCATC TAGCATAAAA GGAATAAATA GTAAATCTGG AAAGAGTTGA CTCTGAAGCT
  TATTAGTGAC TCTGAAGGAT GGTTGAGAGT TGGCCTGGTA GGTAAACTTC TATTCAGGTA
  Y
  CTTGGGATAG AGCAGGTGCC TTTGTAAAGC TCTCTGCTCT GGTGAAACCC CTAATCAATG
  TCATCAAACA CATTAGGAAT GGGAGCAGAC CTAGGCATGA GCATTTTAAA AGGCCTTCCA
  TTGTTTCCCA TATAAAGCCA AGGCAGAGAA GCATTGCTCT AATTATAGTC TAGTGGTGTA
  GCCCAGAGTG TGGGCACTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47036105	NES10764066	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31280798					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47036105	NES10764066	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79897793 () rs orientation: forward

Symbol	Name	Function Class
Gm65044	predicted gene, 65044	within coordinates
Rr1544	regulatory region 1544	within coordinates
Rr578626	regulatory region 578626	777 bp distal
Rr578627	regulatory region 578627	within coordinates