rs31280309 SNP Detail

Summary

• ID
  rs31280309
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:130370245 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTTTGAGTC CAGCCTGGTC TATAGAGTGA GTTCCAGGGA
  AGCCAGGGCT ACACAGAGAA AGCCTGTCTC GAAAACAAAC AAACAAACAA AAAAAAAAAA
  M
  CAAAAAAAAA GTTAACACTA TTCTTTTTCA TATACATTTC ATTCAAATGG CTAAAAATCA
  AAGTTTGTGA GCTTTGACCA GAGTTGTCAG TGACAATGG                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45516692	mCV24294393	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31280309					SNP	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130370245 () rs orientation: forward

Symbol	Name	Function Class
Col25a1	collagen, type XXV, alpha 1	Intron
Cpgi13824	CpG island 13824	1117 bp distal
Rr585176	regulatory region 585176	1633 bp distal
Rr585177	regulatory region 585177	198 bp proximal
Rr585178	regulatory region 585178	287 bp proximal