rs31279768 SNP Detail

Summary

• ID
  rs31279768
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:86990880 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTGGCTGG TCGTATCGGT
  GCCACCCGGA GCAGAAGGGC CAGAGGGTGT AGGCTCTGTG CCATAGTCAG AGGCAGGGGC
  CCGGCTGTAC GTATTGAGCT GGGCATAACC ACTGGAGTGG GACAGGCGGG ATGATGGGCG
  CCCATCAAAA CGAGTAGGGC CAGGGGCACG GTAGTCAGCA TACAGCACCG CCCTGGAGGA
  Y
  GGGCGATCTT CGTGGGCGCG CACATTGTAA TAACCATTGG TGGGATCCTG AGGGCAAGAA
  GAGAAAAGGG TAAATGTGGG AACTTCCCCC AGTGTAATAA GCTCTCCTGA GTCTTCTGCC
  CATGCCCAGC TCAATCCATG TCTCCTCCCC TTCTCACCAT ACCGGTGATT CTATCTTCTG
  TTCCTTCTGC AGACTTCTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45516070	mCV24905792	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss135453703	ENSMUSSNP1289556	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31279768					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:86990880 () rs orientation: forward

Symbol	Name	Function Class
Kirrel1	kirre like nephrin family adhesion molecule 1	Coding-Synonymous
Rr579434	regulatory region 579434	906 bp distal
Rr579435	regulatory region 579435	1149 bp distal