rs31278509 SNP Detail

Summary

• ID
  rs31278509
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:68190437 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCACCACTG GACCTCAGCT GTAGCTCCTA TCTAGAAGAG
  AAACTAGGCA CTCAGCTCCT TACAATGTGG CTCATGGAAG CTAGGAAAGT TTTGCAATAG
  Y
  CCTTTCTTTT CCTTATACAG AAAGTACAAG TACAGATGAC TGAATGAAAA GAAAGGAAAT
  ATAGTTTGTG TAAACATTTA CATTTAATTT TGTCTTAAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss45516629	mCV24617316	ABI	CRAMUS_MOUSE	f	SNP		T	T				C		T
ss50976064	NES13930596	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	C		C		C	T		C	C	C		T
ss135262179	ENSMUSSNP3824503	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T
ss320791292	CHEV_3_68087026	CHEVERUD	SCREENING_POP	f	SNP												T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs31278509					SNP	T	T	T	T	T	C	C	C	T	C	T	T	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50976064	NES13930596	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68190437 () rs orientation: forward

Symbol	Name	Function Class
Iqschfp	Iqcj and Schip1 fusion protein	Intron
Rr577989	regulatory region 577989	72 bp proximal
Schip1	schwannomin interacting protein 1	Intron
Tssr29454	transcription start site region 29454	839 bp downstream