rs31275986 SNP Detail

Summary

• ID
  rs31275986
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:156486541 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGATAAAGC TTACTCTTGC AAAATCTTGG CACTCGAAAA
  TGGCTTTTGT CAATGTTGGG CAAGCAAGCC CTCCTGGCTT CACCTACTTT GTCTGAGGTG
  M
  CACAGAGAAC TGGCAGAAAA GCCATCAGTA CCTCATTTCA ACAGCAGGTC TCAGGTATAT
  TTCAGGATTA AACTGCAGAT CCAGTTGGCA GTGTCGGGGC                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	NZW/LacJ	WSB/EiJ
ss49721307	NES13074215	PERLEGEN	MM_PANEL2	f	SNP	C	A	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	NZW/LacJ	WSB/EiJ
rs31275986					SNP	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49721307	NES13074215	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156486541 () rs orientation: forward

Symbol	Name	Function Class
Rr421217	regulatory region 421217	1511 bp distal
Rr421218	regulatory region 421218	896 bp distal
Rr421219	regulatory region 421219	within coordinates
Rr421220	regulatory region 421220	982 bp proximal
Rr421221	regulatory region 421221	1896 bp proximal
Tor3a	torsin family 3, member A	Intron