rs31275985 SNP Detail

Summary

• ID
  rs31275985
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:156487732 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGATGGC AGCTTGGCTG
  CTGTTAGGTG GCATCAGCCC AGCTCCAACT TCACCCGTGT GCACTATTGT GTATGTATAG
  CTACGTGGCC TGAGTCAGTC CACTAAGGTC AGGTCTCTAG AGGAAAGGGC AGGGTTACTG
  CCAGCTGGTC AGTATCCAAA ATGCTTGCCG TGAGATAGGA GGGTCACTGG GTCACACTGG
  R
  CAATACAGCA CCTAAGAGAG TTTGCCAAGT TATAAAGCAA CTAGGTAGGA GAGTCGGTGC
  CTTGGGGAAC CATTCCGCTG TCTCTGCTTG TGGGAATGTC ATGGACAGCT GAGGCCACTG
  ACTCAGACGG GTGAATACTG TGGGAGCTGG GATCAGTCTT CATTCTGACA TTTCGGTTAT
  GTTAACAGAT GCCTCCATTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49721306	NES13074192	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31275985					SNP	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49721306	NES13074192	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156487732 () rs orientation: forward

Symbol	Name	Function Class
Rr421219	regulatory region 421219	1036 bp distal
Rr421220	regulatory region 421220	within coordinates
Rr421221	regulatory region 421221	705 bp proximal
Rr421222	regulatory region 421222	1846 bp proximal
Tor3a	torsin family 3, member A	Intron