rs31275738 SNP Detail

Summary

• ID
  rs31275738
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:156445276 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTTTTTCAC TTCATCTCAG GGGTATGTAC
  CAGTGGTTGG CTTTTATTAC ATTTATTAAA TTTTGAAGAA GAGTTTTTTG TGTATGTGTT
  GATTATATAG TAAATATATT ACCTAACTCT CCTGGGACAA GAATACCCAA CTCTTCCCAT
  R
  GCTTTAAATT TTACACAGGA TTGTCCTGTG GACTCCGTTC TTTGTACGTT TTGACACCTT
  GACTTTGGTA GCCCTCTTTT GGACCTGAAG TCCCTCCCTA GAGCAGATGG ACCATGTCTA
  GATATCTCCC TGTATATTGA CAGTTGTCAG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss49721409	NES13075084	PERLEGEN	MM_PANEL2	f	SNP	G			A		A	A		A	A		G
ss145800326	ENSMUSSNP3342188	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A		A
ss320072532	CHEV_1_158547837	CHEVERUD	SCREENING_POP	f	SNP								G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs31275738					SNP	G	G	A	A	A	A	A	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49721409	NES13075084	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156445276 () rs orientation: forward

Symbol	Name	Function Class
Abl2	ABL proto-oncogene 2, non-receptor tyrosine kinase	Intron
Rr396425	regulatory region 396425	1798 bp downstream
Rr421203	regulatory region 421203	1293 bp distal
Rr421205	regulatory region 421205	157 bp distal
Tssr9572	transcription start site region 9572	1844 bp downstream
Tssr9573	transcription start site region 9573	1820 bp downstream
Tssr9574	transcription start site region 9574	1773 bp downstream