rs31275737 SNP Detail

Summary

• ID
  rs31275737
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:156445396 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTGGGACAA GAATACCCAA CTCTTCCCAT
  AGCTTTAAAT TTTACACAGG ATTGTCCTGT GGACTCCGTT CTTTGTACGT TTTGACACCT
  TGACTTTGGT AGCCCTCTTT TGGACCTGAA GTCCCTCCCT AGAGCAGATG GACCATGTCT
  M
  GATATCTCCC TGTATATTGA CAGTTGTCAG TGCGGAACTT TGGTTCATCA CATTTAAAGA
  GACATGCAGT GTAAACCGAG CTATGTGTGG CCCCAGGGGG CTTGCTGCTC ATCTCTAATA
  GTGCCTGCTG TGAGTTTGCA AGCCACACAT                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	FVB/NJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss49721408	NES13075085	PERLEGEN	MM_PANEL2	f	SNP	C	A	A	A		A	A		C
ss320072533	CHEV_1_158547957	CHEVERUD	SCREENING_POP	f	SNP					C			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	FVB/NJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs31275737					SNP	C	A	A	A	C	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49721408	NES13075085	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156445396 () rs orientation: forward

Symbol	Name	Function Class
Abl2	ABL proto-oncogene 2, non-receptor tyrosine kinase	Intron
Rr396425	regulatory region 396425	1918 bp downstream
Rr421203	regulatory region 421203	1413 bp distal
Rr421205	regulatory region 421205	277 bp distal
Tssr9572	transcription start site region 9572	1964 bp downstream
Tssr9573	transcription start site region 9573	1940 bp downstream
Tssr9574	transcription start site region 9574	1893 bp downstream