rs31275734 SNP Detail

Summary

• ID
  rs31275734
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:156446958 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ggggaagaa gaggcaggtg gatctgtgag
  ttcaaagcca gcctgttcta cagagcaagt tgtaggatag ccagggatac atagagaaac
  cctgtcccaa aaagccaaaa AAATGTTTTA CATTAATTTA TGTCTGTGTA TGTGTATGCT
  Y
  ACATGTGTGG TTGGAGGACT Gtgtgtgtgt gtgtgtgcgc gcgcgcatgc cctcatgtat
  acgttcacgt gtgaggttag aggacagttt gcaagagtag gctctcttct accacgtggg
  atccgagggt ggaaccagag ttatcaagct                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss45164543	mCV23342073	ABI	CRAMUS_MOUSE	f	SNP		T	C		C	C
ss49721405	NES13075063	PERLEGEN	MM_PANEL2	f	SNP	T		C	C			C		C	C
ss145800349	ENSMUSSNP1638650	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C			C
ss320072540	CHEV_1_158549519	CHEVERUD	SCREENING_POP	f	SNP								T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs31275734					SNP	T	T	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49721405	NES13075063	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156446958 () rs orientation: forward

Symbol	Name	Function Class
Abl2	ABL proto-oncogene 2, non-receptor tyrosine kinase	Intron
Rr421205	regulatory region 421205	1839 bp distal
Rr421206	regulatory region 421206	1666 bp proximal