rs31274953 SNP Detail

Summary

• ID
  rs31274953
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:156487995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGGAACCA TTCCGCTGTC
  TCTGCTTGTG GGAATGTCAT GGACAGCTGA GGCCACTGAC TCAGACGGGT GAATACTGTG
  GGAGCTGGGA TCAGTCTTCA TTCTGACATT TCGGTTATGT TAACAGATGC CTCCATTTCT
  CTTAAAACCA CTCGAGACTC TCACCTGCTC CGTCCTTGGC TTCCATATGC AGAAACCCAC
  R
  TGGCTTCAAT CTGTCCCGTC TTGTCTAGGG GAACCACCCT AAACTCAAAC CTGCCTTCCA
  AGTTCAGCTG GAGAAAAACC ACTCCTACTT CCCCGGGGCA CACTGGGAAC CCCACCTCCC
  CACCCAATTC ATGAGCAAGC CCCAGCCTGT GGAAAATGAG AACAGGTTTG TAACAGTCCA
  CAATTGTAGT CTCCCCTCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ
ss49721303	NES13074200	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ
rs31274953					SNP	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49721303	NES13074200	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156487995 () rs orientation: forward

Symbol	Name	Function Class
Rr421219	regulatory region 421219	1299 bp distal
Rr421220	regulatory region 421220	within coordinates
Rr421221	regulatory region 421221	442 bp proximal
Rr421222	regulatory region 421222	1583 bp proximal
Tor3a	torsin family 3, member A	Intron