rs31271953 SNP Detail

Summary

• ID
  rs31271953
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79795455 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGTGTAGA CTAACTAGCC
  ATGTGACTTC TTCAAGCTTC ACTATTTACA GAGCCCCATG TGTCCTCCTG TAACACAAAG
  GTTGTGTCTA GGGCATGTGG CCACTAACTG AAGTACAGCT TTGCAGTGCT GGTCTATGGA
  AATGATCTTG CCACACAGAG GATACTCTCT GAATGAGAAT GCCATGTCGG GGTTGGAATC
  Y
  GAAGTACACT CAGTCAGTGA CTTGTGTTGC AATGTAGAAC CACCCAGGCT GAAATGTTAG
  AGCATCTCTC TTCAGCTGTG CAATGGCAAT ACTGTCCACC TCATGAAGTT GCTGGTAGCT
  TACACATAGA CAGCAGTTCT TGGCACCAAC CAAACCTTCA ATAAGCGCTG GCTATTGCTG
  TTATTCCACT GAGTGAGCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47035121	NES10768399	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31271953					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47035121	NES10768399	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79795455 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13279	CpG island 13279	1457 bp distal
Gask1b	golgi associated kinase 1B	Intron
Gm36569	predicted gene, 36569	1331 bp upstream
Rr375226	regulatory region 375226	874 bp downstream
Rr578607	regulatory region 578607	1773 bp distal
Rr578608	regulatory region 578608	845 bp distal
Rr578609	regulatory region 578609	1275 bp distal
Rr578610	regulatory region 578610	1235 bp distal
Rr578611	regulatory region 578611	within coordinates
Tssr29605	transcription start site region 29605	1939 bp downstream
Tssr29606	transcription start site region 29606	1921 bp downstream
Tssr29607	transcription start site region 29607	1253 bp downstream
Tssr29608	transcription start site region 29608	1193 bp downstream
Tssr33752	transcription start site region 33752	1975 bp upstream
Tssr33753	transcription start site region 33753	1910 bp upstream
Tssr33754	transcription start site region 33754	1326 bp upstream