rs31271182 SNP Detail

Summary

• ID
  rs31271182
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79795275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATTT AGAGTGTAGA CTAACTAGCC
  R
  TGTGACTTCT TCAAGCTTCA CTATT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45528341	mCV23428343	ABI	CRAMUS_MOUSE	f	SNP		A					A		G
ss47035109	NES10768392	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	G	G	A		G	G	G	G		G	G	G	G		A
ss135376955	ENSMUSSNP4811849	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							G
ss320812433	CHEV_3_79691890	CHEVERUD	SCREENING_POP	f	SNP												G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31271182					SNP	A	A	G	G	G	A	A	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47035109	NES10768392	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79795275 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13279	CpG island 13279	1277 bp distal
Gask1b	golgi associated kinase 1B	Intron
Gm36569	predicted gene, 36569	1151 bp upstream
Rr375226	regulatory region 375226	694 bp downstream
Rr578607	regulatory region 578607	1593 bp distal
Rr578608	regulatory region 578608	665 bp distal
Rr578609	regulatory region 578609	1095 bp distal
Rr578610	regulatory region 578610	1055 bp distal
Rr578611	regulatory region 578611	within coordinates
Tssr29602	transcription start site region 29602	1966 bp downstream
Tssr29603	transcription start site region 29603	1904 bp downstream
Tssr29604	transcription start site region 29604	1847 bp downstream
Tssr29605	transcription start site region 29605	1759 bp downstream
Tssr29606	transcription start site region 29606	1741 bp downstream
Tssr29607	transcription start site region 29607	1073 bp downstream
Tssr29608	transcription start site region 29608	1013 bp downstream
Tssr33752	transcription start site region 33752	1795 bp upstream
Tssr33753	transcription start site region 33753	1730 bp upstream
Tssr33754	transcription start site region 33754	1146 bp upstream