rs31271180 SNP Detail

Summary

• ID
  rs31271180
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79795250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCAGACAGA ACTGACCACA TGAGAGCTAA CTCTTTTACC
  TCGACTGTCA CCAATGGACT CAGCCTCTTT AATAAATAAA GAGCATAAAA ATCATAGGTG
  Y
  ATTTAGAGTG TAGACTAACT AGCCATGTGA CTTCTTCAAG CTTCACTATT TACAGAGCCC
  CATGTGTCCT CCTGTAACAC AAAGGTTGTG TCTAGGGCAT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47035107	NES10768391	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31271180					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47035107	NES10768391	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79795250 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13279	CpG island 13279	1252 bp distal
Gask1b	golgi associated kinase 1B	Intron
Gm36569	predicted gene, 36569	1126 bp upstream
Rr375226	regulatory region 375226	669 bp downstream
Rr578607	regulatory region 578607	1568 bp distal
Rr578608	regulatory region 578608	640 bp distal
Rr578609	regulatory region 578609	1070 bp distal
Rr578610	regulatory region 578610	1030 bp distal
Rr578611	regulatory region 578611	18 bp proximal
Tssr29602	transcription start site region 29602	1941 bp downstream
Tssr29603	transcription start site region 29603	1879 bp downstream
Tssr29604	transcription start site region 29604	1822 bp downstream
Tssr29605	transcription start site region 29605	1734 bp downstream
Tssr29606	transcription start site region 29606	1716 bp downstream
Tssr29607	transcription start site region 29607	1048 bp downstream
Tssr29608	transcription start site region 29608	988 bp downstream
Tssr33752	transcription start site region 33752	1770 bp upstream
Tssr33753	transcription start site region 33753	1705 bp upstream
Tssr33754	transcription start site region 33754	1121 bp upstream