rs31270575 SNP Detail

Summary

• ID
  rs31270575
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156604342 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAACACATC TCTCAGAGTG
  GGGGGTATGA TCCTGCCTTC CTGTGACTAT AAAGAACAAT CTTTCATCTG ACTGTAAAAC
  CCACAGTTTA ACTTGGACTG TCTATGGACA AGAGACAGAT ATAGTATTGT TCCTTACCAA
  AAGTAGGAGA TGCCATTCCT GGGACATTTC CTTCATTCTG TCATCCGAAG GATAAACCCA
  R
  CATAGCATAG ACCAGCTACT AACAGGCTGA ATCCCCTTGG CCTGGTTTTT CTCTCTGCAG
  CCTGTCTTCC TCCACCCCCA CTGTAGCTGC TAAGTATTAC ATTGACCCTT CCTTATTATG
  GGCCTGTCTT AGTCAAGGGT TATTATTGCT ATGATAAAAT ATCATGACCA AAGCAACGTG
  GGAAGAAAAG GGTTACTTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49720895	NES13071194	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31270575					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49720895	NES13071194	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156604342 () rs orientation: forward

Symbol	Name	Function Class
Gm71086	predicted gene, 71086	within coordinates
Rr421253	regulatory region 421253	388 bp distal
Rr421254	regulatory region 421254	1147 bp proximal