rs31270280 SNP Detail

Summary

• ID
  rs31270280
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79794086 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCGAATAT CCGTGGCACG
  GTGAAACCCA AGCGCAGGAA GAAGTATGCG GTGGCATCTG CAGCCCCTGA TCAGGAGGTG
  CTGGTTAGAC CATCCCTTAT ACAGCAGGAA GCTGCACGGG CAGCAGATGC TGAAGTACCT
  GGCTATGTTC AGGGTTACCT AACCAAGGTT GGTGAACGAC CCTGGAGGGT GCTGCGTGGT
  S
  CTGGAGTCAG AACTAGAGGT TCAAACTTGC AGCAGCCTAG GGCCCGAGAG AGCAACATTA
  GGATTTATAG CGAGAGCGCC CCCTCATGGC TGAGCAAAGA AGACATCCGC AGAATGCGCC
  TCCTGGCTGA TAGTGAGGTG GCTAGCATCC TACCTATCTC TAAGAGTGGT ACCCGCTTGC
  TGGTGTTGGA AGGGAGCACC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47035097	NES10768543	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31270280					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47035097	NES10768543	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79794086 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13279	CpG island 13279			88 bp distal
Gask1b	golgi associated kinase 1B			Coding-NonSynonymous
				Intron
Gm36569	predicted gene, 36569			within coordinates
Rr375226	regulatory region 375226			within coordinates
Rr578605	regulatory region 578605			1520 bp distal
Rr578606	regulatory region 578606			839 bp distal
Rr578607	regulatory region 578607			404 bp distal
Rr578608	regulatory region 578608			24 bp proximal
Rr578609	regulatory region 578609			73 bp proximal
Rr578610	regulatory region 578610			113 bp proximal
Rr578611	regulatory region 578611			1182 bp proximal
Tssr29598	transcription start site region 29598			1689 bp downstream
Tssr29599	transcription start site region 29599			1660 bp downstream
Tssr29600	transcription start site region 29600			1611 bp downstream
Tssr29601	transcription start site region 29601			1582 bp downstream
Tssr29602	transcription start site region 29602			777 bp downstream
Tssr29603	transcription start site region 29603			715 bp downstream
Tssr29604	transcription start site region 29604			658 bp downstream
Tssr29605	transcription start site region 29605			570 bp downstream
Tssr29606	transcription start site region 29606			552 bp downstream
Tssr29607	transcription start site region 29607			105 bp upstream
Tssr29608	transcription start site region 29608			123 bp upstream
Tssr33752	transcription start site region 33752			606 bp upstream
Tssr33753	transcription start site region 33753			541 bp upstream
Tssr33754	transcription start site region 33754			17 bp downstream