rs31270274 SNP Detail

Summary

• ID
  rs31270274
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79793335 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCCT GGGAAAGGCT GATAGGAGTT
  K
  AAAAGGCTTG CGGTGGCCAG TTCAC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45479514	mCV23428352	ABI	CRAMUS_MOUSE	f	SNP	T	T						G
ss47035091	NES10768540	PERLEGEN	MM_PANEL2	f	SNP	T	T	G	G	G	T	T	G	G	G		T	G	G	T		T
ss135376943	ENSMUSSNP5536333	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						G
ss320812429	CHEV_3_79689950	CHEVERUD	SCREENING_POP	f	SNP											G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31270274					SNP	T	T	G	G	G	T	T	G	G	G	G	T	G	G	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47035091	NES10768540	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79793335 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13279	CpG island 13279			29 bp proximal
Gask1b	golgi associated kinase 1B			Intron
				mRNA-UTR
Gm36569	predicted gene, 36569			within coordinates
Rr375226	regulatory region 375226			within coordinates
Rr578605	regulatory region 578605			769 bp distal
Rr578606	regulatory region 578606			88 bp distal
Rr578607	regulatory region 578607			326 bp proximal
Rr578608	regulatory region 578608			775 bp proximal
Rr578609	regulatory region 578609			824 bp proximal
Rr578610	regulatory region 578610			864 bp proximal
Rr578611	regulatory region 578611			1933 bp proximal
Tssr29596	transcription start site region 29596			1457 bp downstream
Tssr29597	transcription start site region 29597			1436 bp downstream
Tssr29598	transcription start site region 29598			938 bp downstream
Tssr29599	transcription start site region 29599			909 bp downstream
Tssr29600	transcription start site region 29600			860 bp downstream
Tssr29601	transcription start site region 29601			831 bp downstream
Tssr29602	transcription start site region 29602			26 bp downstream
Tssr29603	transcription start site region 29603			12 bp upstream
Tssr29604	transcription start site region 29604			84 bp upstream
Tssr29605	transcription start site region 29605			153 bp upstream
Tssr29606	transcription start site region 29606			186 bp upstream
Tssr29607	transcription start site region 29607			856 bp upstream
Tssr29608	transcription start site region 29608			874 bp upstream
Tssr33752	transcription start site region 33752			135 bp downstream
Tssr33753	transcription start site region 33753			153 bp downstream
Tssr33754	transcription start site region 33754			768 bp downstream