rs31270146 SNP Detail

Summary

• ID
  rs31270146
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156575574 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGCTATC TTAGTATGGT
  CATTGGAAAA TCTCTCTGTA TAAAAGAAAT ACCATCCCCG TGTTGGTATC CGTCACAGCA
  AATGCTATTT GGTTTGGAAT TCTTGATTCC CAGCTGGTGA GAGGCTTGCC TCAGAGTATA
  ATTTTTCTTA CAGAATGAGT TCTAGACCCG ATTTTAAAAC CTGGATTTGA GTTCTGGGAT
  Y
  TGCCAATTAG AAGTGTTATC TTGCCGGACT CTGGTATGTT TATAGAGTTT TCCACGGACT
  GTGAGGACAC GATTGGGCAC TAAAGAAACA CTGGCTAAAT AAATAGAGTG TGGGGTGGGG
  GGAGAGAAAT GAACACTTTG GGAGGCTCTT GAAAAGGGTC CAGGGCCTGA CATCAGCCTC
  AACGCTAGCC TTCACAAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49721000	NES13071947	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31270146					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49721000	NES13071947	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156575574 () rs orientation: forward

Symbol	Name	Function Class
Cpgi902	CpG island 902	488 bp proximal
Gm39683	predicted gene, 39683	within coordinates
Rr421242	regulatory region 421242	514 bp proximal
Rr421243	regulatory region 421243	1153 bp proximal
Rr421244	regulatory region 421244	1902 bp proximal