rs31269492 SNP Detail

Summary

• ID
  rs31269492
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79793093 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGTA GTGGCTTTAA CTGTGAGCTA
  K
  CAAACGCTCT TTGCAGCTTG TCTTC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47035089	NES10768539	PERLEGEN	MM_PANEL2	f	SNP	G	G	T	T	T	G	T	T	T		T	T	T	T		G
ss135376940	ENSMUSSNP5788461	ENSEMBL	ENSEMBL_Sanger	f	SNP		G					T
ss320812428	CHEV_3_79689708	CHEVERUD	SCREENING_POP	f	SNP										T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31269492					SNP	G	G	T	T	T	G	T	T	T	T	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47035089	NES10768539	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79793093 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13279	CpG island 13279	271 bp proximal
Gask1b	golgi associated kinase 1B	Intron
Gm36569	predicted gene, 36569	within coordinates
Rr375226	regulatory region 375226	within coordinates
Rr578605	regulatory region 578605	527 bp distal
Rr578606	regulatory region 578606	48 bp proximal
Rr578607	regulatory region 578607	568 bp proximal
Rr578608	regulatory region 578608	1017 bp proximal
Rr578609	regulatory region 578609	1066 bp proximal
Rr578610	regulatory region 578610	1106 bp proximal
Tssr29596	transcription start site region 29596	1215 bp downstream
Tssr29597	transcription start site region 29597	1194 bp downstream
Tssr29598	transcription start site region 29598	696 bp downstream
Tssr29599	transcription start site region 29599	667 bp downstream
Tssr29600	transcription start site region 29600	618 bp downstream
Tssr29601	transcription start site region 29601	589 bp downstream
Tssr29602	transcription start site region 29602	163 bp upstream
Tssr29603	transcription start site region 29603	254 bp upstream
Tssr29604	transcription start site region 29604	326 bp upstream
Tssr29605	transcription start site region 29605	395 bp upstream
Tssr29606	transcription start site region 29606	428 bp upstream
Tssr29607	transcription start site region 29607	1098 bp upstream
Tssr29608	transcription start site region 29608	1116 bp upstream
Tssr33752	transcription start site region 33752	377 bp downstream
Tssr33753	transcription start site region 33753	395 bp downstream
Tssr33754	transcription start site region 33754	1010 bp downstream